miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|161470454|gb|EX588438.1|EX588438 GCTGGACCACGAAGTGCTCTTTTTAAGCTATGCAAGAGGTTGCAGTGGCCCATGCCAGAATTCGAATTTGTGGAACAAAG
GTTCAGGACTCCTATTGTTCTGGACGGGGTAACCACAACGAACTTCAATAGCTTCGTGTCAACCATCACCTTGCACATAC
CTGATGTAACTGCCATTACAATTCAAGGCAAGCGGCAAACTGACAAAAAGAGCTCCCAGGATTCAGCGTCGCTGATAATG
CTCCACAAGCTTCAAGAGCTCAAGGTCTGTATATGCAAGACTTAGCAAAGCATCATGGATCCACTTGCCAGCTAATTGCT
ATGGCTCGTTAACCTGGGGATCTTATCCTCCATCCCAAAGTGAATTACTCCCTCCGTTCCTAAATATAAGATCTTTTAAA
GATTTTACTATAGGAACGGAGGTAGTTTGTTGGAAATGTTTATGAAAGGCTCGGTGATGGTGCTAGATTATCCTGCAGGA
TATCTTAGCAGTATTAATGCCTGTCTTCCGAAAATAACACTATACAATTTCACTTGCTGGACAATTAAAACATTTTGCAA
GAACTGATATTGCTTTGGTTTGAATCCATATTTGGGTCAATTATTGAC




Most similar to sp|Q7XD96|DCL3B_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q7XD96|DCL3B_ORYSJ Endoribonuclease Dicer homolog 3b OS=Oryza
            sativa subsp. japonica GN=DCL3B PE=2 SV=2
          Length = 1637

 Score =  174 bits (441), Expect = 4e-43
 Identities = 82/93 (88%), Positives = 88/93 (94%)
 Frame = +1

Query: 4    GPRSALFKLCKRLQWPMPEFEFVEQRFRTPIVLDGVTTTNFNSFVSTITLHIPDVTAITI 183
            GPRSALFKLCK LQWPMPEFEFVEQRFRTPIV+DG TTTNFNSFVSTITLHIPD T IT 
Sbjct: 1545 GPRSALFKLCKILQWPMPEFEFVEQRFRTPIVMDGATTTNFNSFVSTITLHIPDATTITF 1604

Query: 184  QGKRQTDKKSSQDSASLIMLHKLQELKVCICKT 282
            QG+R+TDKKS+QDSASL+MLHKLQELK+CICKT
Sbjct: 1605 QGERRTDKKSAQDSASLMMLHKLQELKICICKT 1637